| Protein: | RU1A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 250 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RU1A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
170.0 | [0..9] | [250..2] |
|
|
168.0 | [0..9] | [250..2] |
|
|
167.0 | [0..9] | [250..2] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK 60
61 GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAK
|
| Detection Method: |  |
| Confidence: | 18.30103 |
| Match: | 1audA |
| Description: | Splicesomal U1A protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [97-157] |
1 11 21 31 41 51
| | | | | |
1 TKSDVVAKAD GTFVPREKRK RHEEKGGGKK KKDQHHDSTQ MGMPMNSAYP GVYGAAPPLS 60
61 Q
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.246 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.244 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.214 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.214 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
|
Region A: Residues: [158-250] |
1 11 21 31 41 51
| | | | | |
1 VPYPGGMKPN MPEAPAPPNN ILFVQNLPHE TTPMVLQMLF CQYQGFKEVR MIEAKPGIAF 60
61 VEFADEMQST VAMQGLQGFK IQQNQMLITY AKK
|
| Detection Method: | |
| Confidence: | 15.39794 |
| Match: | 2u1aA |
| Description: | RNA BINDING DOMAIN 2 OF HUMAN U1A PROTEIN, NMR, 20 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
