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View Structure Prediction Details

Protein: CCA32_ARATH
Organism: Arabidopsis thaliana
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCA32_ARATH.

Description E-value Query
Range
Subject
Range
gi|7438516, gi|2... - pir||T09962 cyclin A-type - Madagascar periwinkle, gi|2190259|dbj|BAA20410.1| A-type cyclin [Cathar...
312.0 [0..1] [370..1]
gi|7438513, gi|1... - pir||T02968 cyclin A-type (clone 59) - common tobacco, gi|1064931|emb|CAA63541.1| cyclin A-like prot...
312.0 [0..1] [369..10]
CCA31_ARATH - Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CYCA3-1 PE=3 SV=1
305.0 [0..1] [372..1]
gi|83032266 - gi|83032266|gb|ABB97043.1| cyclin-dependent protein kinase regulator-like protein [Brassica rapa]
302.0 [0..1] [372..1]
gi|114599953 - gi|114599953|ref|XP_517728.2| PREDICTED: cyclin B1 [Pan troglodytes]
299.0 [0..3] [370..115]
gi|73999528 - gi|73999528|ref|XP_544149.2| PREDICTED: similar to G2/mitotic-specific cyclin B1 [Canis familiaris]
295.0 [0..3] [370..12]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1
gi|123990181 - gi|123990181|gb|ABM83901.1| cyclin B1 [synthetic construct]
288.0 [0..3] [370..12]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK  60
   61 PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG PYVADIYEYL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL  60
   61 SLKTVNKQKL QLVGVSAMLI ASKYEEISPP KVDDFCYITD NTFSKQDVVK MEADILLALQ 120
  121 FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV 180
  181 FLARFIIRPK QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF 240
  241 QCVATMPVSP ELPVTFWEDV TI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 2b9rA
Description: No description for 2b9rA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle