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View Structure Prediction Details

Protein: NLTPC_ARATH
Organism: Arabidopsis thaliana
Length: 119 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NLTPC_ARATH.

Description E-value Query
Range
Subject
Range
gi|21668053 - gi|21668053|gb|AAM74206.1|AF519812_1 non-specific lipid transfer protein [Nicotiana tabacum]
135.0 [0..4] [116..3]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTPKIITC LIVLTIYMAS PTESTIQCGT VTSTLAQCLT YLTNSGPLPS QCCVGVKSLY  60
   61 QLAQTTPDRK QVCECLKLAG KEIKGLNTDL VAALPTTCGV SIPYPISFST NCDSISTAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 1be2A
Description: LIPID TRANSFER PROTEIN COMPLEXED WITH PALMITATE, NMR, 10 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.619696930993462 bayes_pls_golite062009
lipid binding 0.426912810837979 bayes_pls_golite062009
transporter activity 0.166266607468725 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle