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View Structure Prediction Details

Protein: CP41B_ARATH
Organism: Arabidopsis thaliana
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CP41B_ARATH.

Description E-value Query
Range
Subject
Range
gi|41205692 - gi|41205692|gb|AAR99612.1| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]
274.0 [0..54] [362..3]

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Predicted Domain #1
Region A:
Residues: [1-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKMMMLQQH QPSFSLLTSS LSDFNGAKLH LQVQYKRKVH QPKGALYVSA SSEKKILIMG  60
   61 GTRFIGLFLS RILVKEGHQV TLFTRGKSPI AKQLPGESDQ DFADFSSKIL HLKGDRKDYD 120
  121 FVKSSLSAEG FDVVYDINGR EAEEVEPILE ALPKLEQYIY CSSAGVYLKS DILPHCEEDA 180
  181 VDPKSRHKGK LETESLLQSK GVNWTSIRPV YIYGPLNYNP VEEWFFHRLK AGRPIPVPNS 240
  241 GIQISQLGHV KDLATAFLNV LGNEKASREI FNISGEKYVT FDGLAKACAK AGGFPEPEIV 300
  301 HYNPKEFDFG KKKAFPFRDQ HFFASVEKAK HVLGWKPEFD LVEGLTDSYN LDFGRGTFRK 360
  361 EADFTTDDMI LSKKLVLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.221849
Match: 1r66A
Description: Crystal Structure of DesIV (dTDP-glucose 4,6-dehydratase) from Streptomyces venezuelae with NAD and TYD bound
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.03099072397093 bayes_pls_golite062009
oxidoreductase activity 0.442294542097958 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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