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View Structure Prediction Details

Protein: IF4B1_ARATH
Organism: Arabidopsis thaliana
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF4B1_ARATH.

Description E-value Query
Range
Subject
Range
gi|6224611 - gi|6224611|gb|AAF05869.1|AF021805_1 eIF4B [Arabidopsis thaliana]
656.0 [0..1] [532..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAWGGIGI GAWADEAERA DEEQAAEATA ATADTQSFPS LREAAAATAT SGKSRKMKKM  60
   61 SLSEFTTGAY TAPGGRNSVG LTQQEILQLP TGPRQRSEEE MQPGRL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGFSSYGGR SGGRIGRDRD DSDGSWSGGG GGGGRRPYGG GFDDDRRGNQ SRVSDFPQPS  60
   61 RADEVDDWGK EKKPLPSFDQ GRQGRYSGDG GGFGGGGSGF GGGGGGGGGG LSRADDVDNW 120
  121 GAGKRQAPVR SSTFGSSFG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGQEERRRL VLEPRKVESG GSETPPVVEK TSKPNPFGAA RPREDVLAEK GLDWKKIDSE  60
   61 IEAKKGSSQT SRPTSAHSSR PSSAQSNRSE SSGLNNVVKP RPKVNPFGDA KPREVLLEEQ 120
  121 GKDWRKM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [373-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLELEHRRVD RPETEEEKML KEEIEELRKK LEKESVAPEI KESDQEPGSN NNHNDLPEII  60
   61 RGKEKDLEIL TRELDDKVRF RQKPVERPGS GAGRTGTYSE RTHSRAGSID ETRSFESTER 120
  121 PRSRGAVDAW VRPANEQRRN FQGTKERGFF SNRSSSREGW 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle