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View Structure Prediction Details

Protein: gi|25320665, gi|...
Organism: Arabidopsis thaliana
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25320665, gi|....

Description E-value Query
Range
Subject
Range
gi|110738871, gi... - gi|29824361|gb|AAP04141.1| putative formyl transferase [Arabidopsis thaliana], gi|110738871|dbj|BAF0...
349.0 [0..1] [355..1]

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Predicted Domain #1
Region A:
Residues: [1-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRRFICYN ASSTVSSIAP SPKKKPLIFL GSPQVSVSVL EALFNASNAP NSSFEVAGIV  60
   61 TQPPSRRDRG KKVLPSPVAQ YALDKGLPSD LIFSPEKAGD EAFLSALREL QPELCITAAY 120
  121 GNILPTKFLK IPVHGTVNIH PSLLPLYRGA APVQRALQDG VPETGVSLAF TVRKLDAGPV 180
  181 IASKRFQVDD LIKAPELLSF LFSEGSNLLI RELPSIFDGS AKSKAAPQDD SKATLAPKIA 240
  241 PDEAWLSFDQ EAFVLHNKVR AFAGWPGTRA KVVVLDEKSG QQNVLELKIM STRVCKDLEI 300
  301 QDSEQDYVTF KKGSLIFPCR GGTALEVLEV QLPGKKAINA AAFWNGLRGQ KLKKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.522879
Match: 1fmtA
Description: Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydroxymethyl-, formyl- and related transferase activity 5.69633962913959 bayes_pls_golite062009
methionyl-tRNA formyltransferase activity 5.65386414092027 bayes_pls_golite062009
methyltransferase activity 2.76628443233732 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 2.70337357342253 bayes_pls_golite062009
catalytic activity 2.53047786804923 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 2.44659532474253 bayes_pls_golite062009
ligase activity 1.96240394924455 bayes_pls_golite062009
transferase activity 1.21569993951472 bayes_pls_golite062009
DNA N-glycosylase activity 0.44549344555131 bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity 0.274274040236549 bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds 0.260905445900329 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle