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View Structure Prediction Details

Protein: NRT21_ARATH
Organism: Arabidopsis thaliana
Length: 530 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRT21_ARATH.

Description E-value Query
Range
Subject
Range
gi|57283315 - gi|57283315|emb|CAG26716.1| nitrate transporter [Populus tremula x Populus tremuloides]
287.0 [0..1] [530..1]

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Predicted Domain #1
Region A:
Residues: [1-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP  60
   61 HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI GNAGVASVSG SIFSRLVMGA 120
  121 VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN 180
  181 SQIIGLVNGT AAGWGNMGGG ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI 240
  241 LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN 300
  301 VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT 360
  361 AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV PFVSRRALGI ISGLTGAGGN 420
  421 FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE 480
  481 AHYYGSEWNE QEKQKNMHQG SLRFAENAKS EGGRRVRSAA TPPENTPNNV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.39794
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle