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View Structure Prediction Details

Protein: glb-25
Organism: Caenorhabditis elegans
Length: 189 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-25.

Description E-value Query
Range
Subject
Range
gi|187039811, gi... - gi|39579284|emb|CAE56950.1| Hypothetical protein CBG24799 [Caenorhabditis briggsae], gi|187039811|em...
239.0 [0..63] [189..21]

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Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFKKLRKN KDKNLPLPEP EAVKPLDKRI GIDSYRDFFT LKNWWKSVDR KRVEASTYMF  60
   61 SKYLNDFPQN KDLYLKLKNV NAQTVDMNCS DPGFEAIAAQ YLKVFDDVIT AVEEKPGDVQ 120
  121 TACDRLQAVG KMHRQKVSGM DGTMFQNMEE PFIQMVSHIL QDRFNEKAEM LYRKFFQFCL 180
  181 KYLLEGFNG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.61
Match: 1hlmA
Description: AMINO ACID SEQUENCE OF A GLOBIN FROM THE SEA CUCUMBER CAUDINA (MOLPADIA) ARENICOLA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.507012591235093 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle