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View Structure Prediction Details

Protein: glb-5
Organism: Caenorhabditis elegans
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-5.

Description E-value Query
Range
Subject
Range
glb-5 - status:Partially_confirmed UniProt:Q18083 protein_id:AAK52176.2
504.0 [0..222] [476..104]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNETTVGVGK MYEEFRITQL VNETLTTVIE KVQTNHEKIS TKAKPRPLSA INEEIREYDQ  60
   61 LSRELEKDYR RSMRIVDDDF ELARTHWIQL QKSNKQGLAI RGCFLTMLEK Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQVRPIWGFG KRIEGRGDET WKPEIVEDFY FRHHCASLQA ALNMIIQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 1kr7A
Description: Nerve tissue mini-hemoglobin (neural globin)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [159-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKDDKSGMRR MLNEMGAHHF FYDACEPHFE VFQDSLLESM KLVLNGGDSL DDDIEQSWIC  60
   61 VSEKHHCASL QAALNMIIQN KDDKSGMRRM LNEMGAHHFF YDACEPHFEV FQDSLLESMK 120
  121 LVLNGGDSLD DDIEQSWICL LQTIRLHMGE GIEIQRANYL TQCLIPKEME EVRANWMQVE 180
  181 NYGFRKAGLL LCQSAFDNYS ELLKTHNLSM TLPIEANKTS DSFVALSDQI MQALDKTIQS 240
  241 YTPEEGFLNL IQEIKDFVIK FLVVEVCPPL IRKSFIDGLI HMLCKILSIK HVKEDFLHIW 300
  301 KKVYRVMEQA MVANIVEY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 1o1nA
Description: Hemoglobin, alpha-chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle