YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: glb-9
Organism: Caenorhabditis elegans
Length: 249 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-9.

Description E-value Query
Range
Subject
Range
gi|73988393 - gi|73988393|ref|XP_542374.2| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris]
183.0 [0..46] [205..41]

Back

Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELSTSPYQ FRRTQSCRVT NKGPNGLARR GTQRGCSRSK STRRGNLGTI ASLTFSQKQA  60
   61 LNLSWRLLKP QASACFRKIF LELEIASPKV KQIFYKAALV DAFNKDDDNS ATMEVHIKLT 120
  121 TKFFDELLVS LDDETEFVNK IRGIGSAHAI LAKGSNFSSD IWERLGEIAM ERVCSHEVVT 180
  181 KTREASRAWR TLIAILIDEL RGGFEGELRQ HRKSSSTDQI EMGKMEDEEE LHAKLQQLRM 240
  241 DYNQTLPYT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1cqxA
Description: Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle