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View Structure Prediction Details

Protein: Y5370_ARATH
Organism: Arabidopsis thaliana
Length: 482 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y5370_ARATH.

Description E-value Query
Range
Subject
Range
gi|5821294 - gi|5821294|dbj|BAA83905.1| SRK13 [Brassica oleracea]
492.0 [0..1] [480..4]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGLCLNSFT RVLLLLFVFL VFSHKWQRVN AVEPVLELVK GFEAKPDSSI DSFQPLLTDS  60
   61 NGNFSFGFLR VNGSRLSLAV THPNLTDPLW VLDPTR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 1kj1D
Description: Lectin (agglutinin)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [97-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASWSHKTKL FFNGSLVIID PSSRLEWSTH TNGDRLILRN DSNLQVVKTS TFVEWESFDF  60
   61 PGNTLVESQN FTSAMALVSP NGLYSMRLGS DFIGLYAKVS EESQQFYWKH SALQAKAKVK 120
  121 DGAGPILARI NPNGYLGMYQ TGSIPIDVEA FNSFQRPVNG LLILRLESDG NLRGYLWDGS 180
  181 HWALNYEAIR E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [288-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TCDLPNPCGP YSLCTPGSGC SCIDNRTVIG ECTHAASSPA DFCDKTTEFK VVRRDGVEVP  60
   61 FKELMDHKTT SSLGECEEMC VDNCKCFGAV YNNGSGFCYL VNYPIRTMLG VADPSKLGYF 120
  121 KVREGVGKKK SRVGLTVGMS LLAVIALVLM VAMVYVGFRN WRREKRVLEE DNGLSPGPYK 180
  181 NLGSDSFNSV EMSRR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.963
Match: 2qtsA
Description: No description for 2qtsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle