YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15237826, gi|...
Organism: Arabidopsis thaliana
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237826, gi|....

Description E-value Query
Range
Subject
Range
gi|15237825, gi|... - gi|15237825|ref|NP_197766.1| agenet domain-containing protein [Arabidopsis thaliana], gi|10176844|db...
309.0 [0..1] [426..18]

Back

Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSPGTTVEV SSKINNKEVV WVPAVVIKEF KEDDEYKYIV RVYDKSFSCK GNKAARLNKT  60
   61 VDLCSLRPTP PSISVEEYQL KEYVEVFHDG MGWRQGRVMK IQERVMLSQG RVMVSQGRVM 120
  121 GNLSQKCYIV LLEATKKQIS FKQSDLRPLQ VWEDGVWKML Q

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.08
Match: 2gf7A
Description: No description for 2gf7A was found.

Predicted Domain #2
Region A:
Residues: [162-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRESSLTQGS GDETSDSVRN ANESDPPVTP RPGITTPPLK QIEAETQRKT LPRNQNASVN  60
   61 DSTRENENSE DINRKRKREE SLCSDASVED TTMTLPFEKK LSIWKTLESV ETVPQSPHFS 120
  121 PLVETREDCR EMSAVGMMLT FPCLLEEVKS LQHDNSISSL ISLSNNFCEL EKHGFNVKAP 180
  181 QSRISKLLSL RGKQSMKMDE LKGAEKVTAE KESIKIENER KILELQRLNE EVDKEIAQSK 240
  241 SCAAKIVQQL EDVELQFQTT ASAPW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle