| Protein: | gi|15234324, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1179 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15234324, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
533.0 | [0..15] | [1176..74] |
|
Region A: Residues: [1-149] |
1 11 21 31 41 51
| | | | | |
1 MVDYSSSSSS SVQLSPPQHQ VFLNFRGKQL RNGFVSHLEK ALRRDGINVF IDRNETKGRD 60
61 LSNLFSRIQE SRIALAIFSS MYTESYWCLD ELVKIKDCVD LGTLVVIPIF YMVDTDDVKN 120
121 LKGAFGYTFW KLAKTCNGEK LDKWKQALK
|
| Detection Method: |  |
| Confidence: | 4.39 |
| Match: | 1fyvA |
| Description: | Toll-like receptor 1, TLR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.166909062418251 | bayes_pls_golite062009 |
|
Region A: Residues: [150-616] |
1 11 21 31 41 51
| | | | | |
1 DVPKKLGFTL SEMSDEGESI NQIVGEVIKV LSSDVMPDLE REIPIDDPFP TGEQVPEAAP 60
61 DSPPPLFGIE TRLKQLEEKL DFECKDTLTI GVVGMPGIGK TTLTSMLYEK WQHDFLRCVF 120
121 LHDVRKMWKD CMMDRSIFIE ELLKDDNVNQ EVADFSPESL KALLLSKKSL VVLDNVSDKK 180
181 QIEVLLGESD WIKRGSRIFI TTSDRSVIEG MVDDTYEVLR LTGRDSFEYF SYFAFSGKLC 240
241 PPVRTFMNLS RLFADYAKGN PLALKILGKE LNGKDKTHWE EKLSKLMQSP NKTIQDVLRV 300
301 SYDELGLSHK DVFLDVACFF RSGDEYYVRC LVESCDTEAI DTVSEIKDLA SKFLINISGG 360
361 RVEMHDLLYT FGKELGSQGS RRLWNHKAVV GALKNRVGAV RGIFLDMSEL KKKLPLDRST 420
421 FIKMRNLRYL KFYSSRCDRE CEADSKLNFP EGLEFPLDEI RYLYWLK
|
| Detection Method: | |
| Confidence: | 10.045757 |
| Match: | 1z6tA |
| Description: | Structure of the apoptotic protease-activating factor 1 bound to ADP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [617-1179] |
1 11 21 31 41 51
| | | | | |
1 FPLMKLPKDF NPKNLTDFNL PYSEIEELWE GAKDTQKLKW VDLSHSRKLC NLSGLLNAES 60
61 LQRLNLEGCT SLEELPREMK RMKSLIFLNM RGCTSLRVLP RMNLISLKTL ILTNCSSIQK 120
121 FQVISDNLET LHLDGTAIGK LPTDMVKLQK LIVLNLKDCK MLGAVPEFLG KLKALQELVL 180
181 SGCSKLKTFS VPIETMKCLQ ILLLDGTALK EMPKLLRFNS SRVEDLPELR RGINGLSSLR 240
241 RLCLSRNNMI SNLQIDINQL YHLKWLDLKY CKNLTSIPLL PPNLEILDAH GCEKLKTVAS 300
301 PMALLKLMEQ VQSKFIFTNC NNLEQVAKNS ITSYAQRKSQ LDARRCYKEG GVSEALFIAC 360
361 FPGSDVPSWF NYQTFGSALR LKLPPHWCDN RLSTIALCAV VTFPDTQDEI NRFSIECTCE 420
421 FKNELGTCIR FSCTLGGSWI ESRKIDSDHV FIGYTSSSHI TKHLEGSLKL KEHDKCVPTE 480
481 ASIEFEVIDG AGEIVNCGLS LVYEEPNHVV VERNCKGASS RRDMSVGESI LSIAAGYLSN 540
541 VLRFLWLGVV FFMVYGFSKI FVK
|
| Detection Method: | |
| Confidence: | 27.0 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
