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View Structure Prediction Details

Protein: GRF1_ARATH
Organism: Arabidopsis thaliana
Length: 530 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRF1_ARATH.

Description E-value Query
Range
Subject
Range
GRF2_ARATH - Growth-regulating factor 2 OS=Arabidopsis thaliana GN=GRF2 PE=1 SV=1
376.0 [0..1] [504..1]
GRF6_ORYSJ - Growth-regulating factor 6 OS=Oryza sativa subsp. japonica GN=GRF6 PE=2 SV=2
246.0 [0..123] [525..148]
gi|116310919 - gi|116310919|emb|CAH67857.1| B0403H10-OSIGBa0105A11.9 [Oryza sativa (indica cultivar-group)]
228.0 [0..88] [414..3]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA  60
   61 KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS PYLQYCRNSG YGLGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [116-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNTSNMHGN LLTGVKGPFS LTQWAELEQQ ALIYKYITAN VPVPSSLLLS LKKSFFPYGS  60
   61 LPPNSFGWGS FHLGFSGGNM DPEPGRCRRT DGKKWRCSRD AVPDQKYCER HINRGRHRSR 120
  121 KPVEGQNGHN TNAAAAASAA AASTAAAVSK AAAGTSAVAM RGSDNNNSLA AAVGTQHHTN 180
  181 NQSTDSLANR VQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [308-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSRGASVFPA TMNLQSKETH PKQSNNPFEF GLISSDSLLN PSHKQASYAT SSKGFGSYLD  60
   61 FGNQAKHAGN HNNVDSWPEE LKSDWTQLSM SIPMAPSSPV QDKLAL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [414-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLRLSREFD PAIHMGLGVN TEFLDPGKKT NNWIPISWGN NNSMGGPLGE VLNSTTNSPK  60
   61 FGSSPTGVLQ KSTFGSLSNS SSASSTIIGD NNNKNGDGKD PLGPTTLMNT SATAPSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle