YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15222505, gi|...
Organism: Arabidopsis thaliana
Length: 534 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15222505, gi|....

Description E-value Query
Range
Subject
Range
gi|221089178, gi... - gi|221089178|ref|ZP_03558700.1| GMP synthase, large subunit [Geobacillus sp. Y412MC61], gi|220706876...
GUAA_GEOKA - GMP synthase [glutamine-hydrolyzing] OS=Geobacillus kaustophilus GN=guaA PE=3 SV=1
gi|229328416, gi... - gi|229500698|ref|ZP_04394346.1| GMP synthase, large subunit [Geobacillus sp. Y412MC52], gi|229328416...
GUAA_GEOKA - GMP synthase [glutamine-hydrolyzing] OS=Geobacillus kaustophilus (strain HTA426) GN=guaA PE=3 SV=1
585.0 [0..6] [534..1]

Back

Predicted Domain #1
Region A:
Residues: [1-534]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPTMKPDT VLILDYGSQY THLITRRIRS LNVFSLVISG TSSLKSITSY NPRVVILSGG  60
   61 PHSVHALDAP SFPEGFIEWA ESNGVSVLGI CYGLQLIVQK LGGVVVEGES KEYGKMEIEV 120
  121 KGKSEIFGSE SGGEKQMVWM SHGDEAVKLP EGFEVVAQSA QGAVAALESR KKKIYGLQYH 180
  181 PEVTHSPKGM ETLRHFLFDV CGVSADWKME DLMEEEIKVI NKTVASDEHV ICALSGGVDS 240
  241 TVAATLVHKA IGDRLHCIFV DNGLLRYKEQ ERVMDTFERD LHLPVTCVDA SERFLSELKG 300
  301 VVDPETKRKI IGREFINIFD QFAQELEKKH GKKPAFLVQG TLYPDVIESC PPPGTDRTHS 360
  361 HTIKSHHNVG GLPKDMKLKL IEPLKLLFKD EVRELGRILN VPVGFLKRHP FPGPGLAVRV 420
  421 LGDVTQGNAL EVLRQVDEIF IQSIRDAGLY DSIWQAFAVF LPVRSVGVQG DKRTHSHVVA 480
  481 LRAVTSQDGM TADWFNFEHK FLDDVSRKIC NSVQGVNRVV LDITSKPPST IEWE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 166.0
Match: 1gpmA
Description: GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle