YRC Public Data Repository - Protein Structure Prediction

Protein:	RL142_ARATH
Organism:	Arabidopsis thaliana
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL142_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114586294 - gi\|114586294\|ref\|XP_001135032.1\| PREDICTED: similar to Ribosomal protein L14 [Pan troglodytes]	189.0	[0..1]	[132..95]
gi\|114145740, gi... - gi\|62661762\|ref\|XP_224414.3\| PREDICTED: similar to LRRGT00066 [Rattus norvegicus], gi\|37361818\|gb\|AA...	185.0	[0..2]	[132..143]
gi\|12841593 - gi\|12841593\|dbj\|BAB25272.1\| unnamed protein product [Mus musculus]	177.0	[0..1]	[132..1]
RL14_BOVIN - 60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3	177.0	[0..1]	[132..1]
gi\|148227832, gi... - gi\|46329783\|gb\|AAH68892.1\| MGC83076 protein [Xenopus laevis], gi\|148227832\|ref\|NP_001084724.1\| hypot...	174.0	[0..1]	[133..1]
gi\|7488810, gi\|1... - gi\|7488810\|pir\|\|T06789 hydroxyproline-rich glycoprotein 1 - garden pea (fragment), gi\|1711036\|gb\|AAB...	173.0	[0..1]	[133..132]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFKRYVEIG RVALVNYGED HGKLVVIVDV VDQNRALVDA PDMERIQMNF KRLSLTDIVI  60
   61 DINRVPKKKA LIEAMEKADV KNKWEKSSWG RKLIVQKRRA NLNDFDRFKI MLAKIKKAGV 120
  121 VRQELAKLKK EITA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	2joyA
Description:	No description for 2joyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits