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View Structure Prediction Details

Protein: gi|25404161, gi|...
Organism: Arabidopsis thaliana
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25404161, gi|....

Description E-value Query
Range
Subject
Range
gi|82542049 - gi|82542049|gb|ABB82032.1| TIR-NBS disease resistance-like protein [Populus trichocarpa]
366.0 [0..2] [385..6]

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Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILSRPVNQ VFINFRGKDI RHGFVSHLKD ALKRKNINFF IDTHEQKGRD LNHLFKRIEE  60
   61 ATIALVILSP RYGESKWCLE ELTTIMDQEE KGQMIVIPIF YKVRTEDVEK QTGEFGHMFW 120
  121 SCDEEASLEE MEKWQVALKA VCNKIGLTLD LKRSEAKFIK KVLKAVEEVL TTI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 2j67A
Description: No description for 2j67A was found.

Predicted Domain #2
Region A:
Residues: [174-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSDEAKEGNC VEDVETFNVP LTLPWSWFSS AVELIGAILG LLAETVHADE GRREADFVKK  60
   61 VKTLNVPLAL PWLWFGSAVE LIGAVVGLLI KAVQSDERKE DGCVKKVKTF NIALALPWLW 120
  121 FGSAVELIGS VLGIINTVRS GEGREDDCVK KVKTFYVPLA LPWLWFGSAV ELVGAVLGLL 180
  181 NEIVHKCASP TMVILASQVG SVVAISSRWA DKSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle