YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SRS5_ARATH
Organism: Arabidopsis thaliana
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRS5_ARATH.

Description E-value Query
Range
Subject
Range
SRS7_ARATH - Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1
441.0 [0..1] [345..1]

Back

Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFFYLGGR DNNSNNNKQD HHQVDKDHHH QDKSNYLYLY KDEIYNNNKG FEIWPPQYFQ  60
   61 QQEHQQQQQQ QQHASAPANF YSFGMVPSGS SSNNNNNRSR SLYFNVVSDH E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGGFTVTRQG GMNCQDCGNQ AKKDCPHMRC RTCCKSRGFH CQTHVKSTWV PAAKRRERLA  60
   61 QLASLQHHSA SSRETQNAKR LREASGGDNN DDKDHSGGGG SALANTRVVN ANSNSGLEVS 120
  121 QHLPPEVNSP AIFRCVRVSS IEEDEDDQAY AYQTAVNIGG HIFKGILYDQ GPEHQDNHHL 180
  181 NLLASTATTT NVEETATKTV TGNNNNGLML DPSSLYPAQL NSFIAGTPFF TPPRS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 128.017729
Match: PF05142.3
Description: No description for PF05142.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle