YRC Public Data Repository - Protein Structure Prediction

Protein:	PPSP2_ARATH
Organism:	Arabidopsis thaliana
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPSP2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|73967325 - gi\|73967325\|ref\|XP_854556.1\| PREDICTED: similar to sarco/endoplasmic reticulum Ca2+ -ATPase isoform ...	182.0	[0..27]	[278..561]
gi\|47217546 - gi\|47217546\|emb\|CAG02473.1\| unnamed protein product [Tetraodon nigroviridis]	181.0	[0..54]	[278..623]
AT2A3_MOUSE - Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Mus musculus GN=Atp2a3 PE=1 SV=3	179.0	[0..27]	[278..559]
gi\|76643758, gi\|... - gi\|76643758\|ref\|XP_589807.2\| PREDICTED: similar to ATPase, Ca++ transporting, ubiquitous [Bos taurus...	179.0	[0..60]	[278..588]
gi\|109112811 - gi\|109112811\|ref\|XP_001092435.1\| PREDICTED: sarco/endoplasmic reticulum Ca2+ -ATPase isoform 1 [Maca...	178.0	[0..60]	[278..588]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNNNIVIV FDFDKTIIDV DSDNWVVDEL GFTDLFNQLL PTMPWNSLMN RMMKELHDHG  60
   61 KTIEEIKQVL RRIPIHPRVI PAIKSAHALG CELRIVSDAN TLFIETIIEH LGIGEFFSEI 120
  121 NTNPGLVDEQ GRLIVSPYHD FTKSSHGCSR CPPNMCKGLI IDRIQASLTK EGKTSKMIYL 180
  181 GDGAGDYCPS LGLKAEDYMM PRKNFPVWDL ISQNPMLVKA TVRDWTDGED MERILMEIIN 240
  241 EIMSSEEGEE NDKMLSSENC KISVGIVHEP IQVPLNLVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1iwoA
Description:	Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits