YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DOF44_ARATH
Organism: Arabidopsis thaliana
Length: 210 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DOF44_ARATH.

Description E-value Query
Range
Subject
Range
DOF43_ARATH - Dof zinc finger protein DOF4.3 OS=Arabidopsis thaliana GN=DOF4.3 PE=3 SV=1
267.0 [0..1] [199..1]

Back

Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNLNVFANE DNQVNGLKRP PPSRVCPRCD SDNTKFCFYN NYSESQPRYF CKNCRRYWTH  60
   61 GGALRNIPVG GSCRKPKRLK VDQSSISEMV SVENQPINHQ SFRQTQENN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.986
Match: 1jocA
Description: Eea1; Eea1 homodimerisation domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [110-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFVRSFDASS SATVTAVPNH FGYLSELHGV TNLLPIQSFR TMDCLDFGDE SFQQGYYDVG  60
   61 SNDLIDNPLI NQSIGGYVDN LTSYCINQVE PKLQPRYEHE S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle