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View Structure Prediction Details

Protein: UBP19_ARATH
Organism: Arabidopsis thaliana
Length: 672 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP19_ARATH.

Description E-value Query
Range
Subject
Range
gi|51971603 - gi|51971603|dbj|BAD44466.1| unknown protein [Arabidopsis thaliana]
328.0 [0..1] [622..1]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD  60
   61 TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK CKGFRSTDSS PVRRDDIDFE 120
  121 ASL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.39794
Match: 2g43A
Description: No description for 2g43A was found.

Predicted Domain #2
Region A:
Residues: [124-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGNRSASKKT RIALVPQQSQ SKATLKPTDV LFPYESFVRY YNWDRPIMAP CGLTNCGNSC  60
   61 FANVVLQCLS WTRPLVAYLL ERGHKRECRR NDWCFLCEFE NHLDRANYSR FPFSPMNIIS 120
  121 RLPNIGGNLG YGRQEDAHEL MRFAIDMMQS VCLDEFGGEK VVPPRAQETT LIQYIFGGLL 180
  181 QSQVQCTACS NVSDQYENMM DLTVEIHGDA VSLEECLDQF TAKEWLQGDN LYKCDRCDDY 240
  241 VKACKRLSIR CAPNILTIAL KRFQGGRFGK LNKRISFPET FDLGPYMSGG GEGSDVYKLY 300
  301 AVIVHLDMLN ASFFGHYICY VKDFRGNWYR IDDSEVEKVE LEDVLSQRAY MLLYSRVQPR 360
  361 PSNLRSEESQ DEKKTDTLNT ESNQDGSVES SGVGTNDTSV SSLCNGIISH SEDPEYE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.522879
Match: 2gfoA
Description: No description for 2gfoA was found.

Predicted Domain #3
Region A:
Residues: [541-672]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA  60
   61 VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE 120
  121 KEHSDTEMID AQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle