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View Structure Prediction Details

Protein: HMT1_ARATH
Organism: Arabidopsis thaliana
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMT1_ARATH.

Description E-value Query
Range
Subject
Range
HMT3_ARATH - Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2
398.0 [0..2] [324..5]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLEKKSALL EDLIKKCGGC AVVDGGFATQ LEIHGAAIND PLWSAVSLIK NPELIKRVHM  60
   61 EYLEAGADIV VTSSYQATIP GFLSRGLSIE ESESLLQKSV ELAVEARDRF WEKVSKVSGH 120
  121 SYNRALVAAS IGSYGAYLAD GSEYSGHYGE NVSLDKLKDF HRRRLQVLVE AGPDLLAFET 180
  181 IPNKLEAQAC VELLEEEKVQ IPAWICFTSV DGEKAPSGES FEECLEPLNK SNNIYAVGIN 240
  241 CAPPQFIENL IRKFAKLTKK AIVVYPNSGE VWDGKAKQWL PSQCFGDDEF EMFATKWRDL 300
  301 GAKLIGGCCR TTPSTINAIS RDLKRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.30103
Match: 1q7mA
Description: Cobalamin-dependent methionine synthase (MetH) from Thermotoga maritima (Oxidized, Monoclinic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
S-methyltransferase activity 3.53817178180686 bayes_pls_golite062009
homocysteine S-methyltransferase activity 2.53321380120921 bayes_pls_golite062009
catalytic activity 1.41033217274476 bayes_pls_golite062009
transferase activity 0.499011632852061 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle