YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA13_ARATH
Organism:	Arabidopsis thaliana
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA13_ARATH.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	128.0	[0..3]	[113..2]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	120.0	[0..1]	[113..1]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	112.0	[0..1]	[113..1]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	109.0	[0..1]	[113..1]
gi\|110671420 - gi\|110671420\|gb\|ABG81961.1\| putative 60S acidic ribosomal protein P1 [Diaphorina citri]	108.0	[0..1]	[113..1]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	107.0	[0..7]	[113..1]
RpLP1-PA, FBpp03... - The gene Ribosomal protein LP1 is referred to in FlyBase by the symbol Dmel\RpLP1 (CG4087, FBgn00025... gi\|194123351, gi... - gi\|195350097\|ref\|XP_002041578.1\| GM16740 [Drosophila sechellia], gi\|194123351\|gb\|EDW45394.1\| GM16740... gi\|194853475, gi... - gi\|194853475\|ref\|XP_001968169.1\| GG24717 [Drosophila erecta], gi\|190660036\|gb\|EDV57228.1\| GG24717 [D... gi\|195575543, gi... - gi\|195575543\|ref\|XP_002077637.1\| GD23023 [Drosophila simulans], gi\|194189646\|gb\|EDX03222.1\| GD23023 ...	106.0	[0..1]	[113..1]
gi\|4239713 - gi\|4239713\|emb\|CAA72658.1\| acidic ribosomal protein [Ceratitis capitata]	106.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVGELACS YAVMILEDEG IAITADKIAT LVKAAGVTIE SYWPMLFAKM AEKRNVTDLI  60
   61 MNVGAGGGGG APVAAAAPAA GGGAAAAAPA AEEKKKDEPA EESDGDLGFG LFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.537602
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.476	N/A	N/A	a.188.1	Description not found.
View	Download	0.431	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.408	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.360	N/A	N/A	a.200.1	Description not found.
View	Download	0.348	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.303	N/A	N/A	a.200.1	Description not found.
View	Download	0.301	N/A	N/A	a.144.2	Ribosomal protein L20
View	Download	0.291	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.273	N/A	N/A	a.144.2	Ribosomal protein L20
View	Download	0.243	N/A	N/A	a.200.1	Description not found.
View	Download	0.240	N/A	N/A	a.200.1	Description not found.
View	Download	0.201	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits