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View Structure Prediction Details

Protein: gi|20465503, gi|...
Organism: Arabidopsis thaliana
Length: 666 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20465503, gi|....

Description E-value Query
Range
Subject
Range
gi|23304947 - gi|23304947|emb|CAD42912.1| extra sporogenous cells [Arabidopsis thaliana]
304.0 [0..3] [661..492]

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Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLKLFLLLS LVSFSHSDSS STVSCPNGTD FHQLTTVFRY VSGFNSSWFS SNCSAVITHV  60
   61 VLPSRKLNGT VSWNPIRNLT RLRVLDLSNN SLDGSLPTWL WSMPGLVSVN LSRNRFGGSI 120
  121 RVIPVNGSVL SAVKELNLSF NRFKHAVNFT GFTNLTTLDL SHNSLGVLPL GLGSLSGLRH 180
  181 LDISRCKING SVKPISGLKS LDYLDLSENS MNGSFPVDFP NLNHLQFLNL SANRFSGSVG 240
  241 FDKYRKFGKS AFLHGGDFVF NDSKIPYHHR IHRLPHRHPP PVRQRNVKTH RTNHTPLVIG 300
  301 LSSSLGALII VIFAAAIILI RRRMKSARTK SRWAIS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2id5A
Description: No description for 2id5A was found.

Predicted Domain #2
Region A:
Residues: [337-666]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPTPLDFKME KSGPFEFGTE SGSSWVADIK EPTAAPVVMA SKPLMNLTFK DLIVATSHFG  60
   61 TESVISDGTC GPLYRAVLPG DLHVAIKVLE RIRDVDQNDA VTAFEALTRL KHPNLLTLSG 120
  121 YCIAGKEKLI LYEFMANGDL HRWLHELPAG ETNVEDWSAD TWESHVGDSS PEKTNWLIRH 180
  181 RIAIGVARGL AYLHHVGTTH GHLVATNILL TETLEPRISD FGINNIARTG DDTNKNNVEF 240
  241 DVYSFGVILF ELLTGKQGSD ENVKSVRRLV KERRGEEALD SRLRLAAGES VNEMVESLRI 300
  301 GYFCTAETPV KRPTMQQVLG LLKDIRTVSR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.0
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle