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View Structure Prediction Details

Protein: gi|2829876, gi|1...
Organism: Arabidopsis thaliana
Length: 222 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2829876, gi|1....

Description E-value Query
Range
Subject
Range
gi|7487679, gi|7... - pir||T04210 hypothetical protein T5C23.60 - Arabidopsis thaliana, gi|7267863|emb|CAB78206.1| putati...
235.0 [0..1] [222..1]
gi|114578381 - gi|114578381|ref|XP_515568.2| PREDICTED: mitochondrial ribosomal protein L19 [Pan troglodytes]
190.0 [0..28] [217..6]
MRPL19 - mitochondrial ribosomal protein L19
gi|208965244 - gi|208965244|dbj|BAG72636.1| mitochondrial ribosomal protein L19 [synthetic construct]
189.0 [0..28] [217..6]
RK19_SPIOL - 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2
188.0 [0..7] [218..2]
RL19_BRADU - 50S ribosomal protein L19 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479...
RL19_BRAJA - 50S ribosomal protein L19 OS=Bradyrhizobium japonicum GN=rplS PE=3 SV=1
184.0 [0..110] [221..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLIRGSTRL LQRHRFSISN TLPFTSSSCG SWSANESRKL GFDSFPSTRA ATYLISSLKN  60
   61 AGFSSLAVVP KQNFSSRCFS TTGDSVQGSP ESDCVVPQRI KFK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLDKTAKHIM QIVDKEAVEE VRTLREIPEI KPGYIVQLKV EVPENKRRVS IVKGVVIARR  60
   61 NAGLNSTFRI RRLVAGVGVE SMFPLYSPNL RVIKVVDKKK VRRAKLYYLR EKVNALKKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.39794
Match: 1vs6P
Description: No description for 1vs6P was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle