YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CDF4_ARATH
Organism: Arabidopsis thaliana
Length: 170 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDF4_ARATH.

Description E-value Query
Range
Subject
Range
DOF15_ARATH - Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1
230.0 [0..1] [170..1]

Back

Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC  60
   61 PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN VPVGAGRRKS KPPGRVVVGM 120
  121 LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.955
Match: 1i3qI
Description: RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle