YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE40788
Organism: Caenorhabditis elegans
Length: 440 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40788.

Description E-value Query
Range
Subject
Range
gi|157754675 - gi|157754675|ref|XP_001669681.1| Hypothetical protein CBG23720 [Caenorhabditis briggsae AF16]
gi|187040833, gi... - gi|39579469|emb|CAE56114.1| Hypothetical protein CBG23720 [Caenorhabditis briggsae], gi|187040833|em...
517.0 [0..1] [437..1]

Back

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEGLLSEV KHFNAHHLDA ALGEQLFYGG KRVFSDVKPG TSSGGDHGCK GGKSELKGAI  60
   61 HNAKHAADKA LNKEGGEDVS KLREEHSALA KK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDDLASLVAE LQLQLSTLRQ GQVNHRRHVL ILGDGNLSFS LAIASSDPET VYFATVFDSK  60
   61 EQFLKKYNAH DTLNALDALS NVILCFGVDA TDLPVRWSNI FNTVIMNFPH PGGKTNLRKS 120
  121 KILLSGIFAS LRSIMDSQAV FLLSLAIGQS GLEKVSDPWM N

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [254-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELPSHKKDSW QAIYLGAENG FILDSLERFD TDRFASYRSS GYKETKKGFN NREGLTFSFK  60
   61 KCDNQQKSLR DFQLAEPPRS GKFKFNYYRP FYAQDLSILF KIGESEGEKL AVELVKSIAG 120
  121 NCLAAISEIE YLRSICPDPP LPNRIYRIIW HGLELPMGRE MCSRIHEELR NRIAEEIVAN 180
  181 NLPLVLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle