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View Structure Prediction Details

Protein: UBP2_ARATH
Organism: Arabidopsis thaliana
Length: 961 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for UBP2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKAKKKAR APTKEIQTME ISKKVSEEPP SQAGEIAEGD VKAVKETQAC VHFDKALNLE  60
   61 KVLDKIKSSR QIKCAECNEG VYGKRGTKAK GSKGKKDFSS SDPKSNNKAI WLCLECGCYV 120
  121 CGGVGLPNGP QSHVLRHSRV TRHRLVIQWE NPQLRWCFPC QLLLPVEKED NGEKKDVLSE 180
  181 VVKLIKGRSL NNLASSDIED QCSGSGSITS DIKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.39794
Match: 2g43A
Description: No description for 2g43A was found.

Predicted Domain #2
Region A:
Residues: [215-546]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGAVTSDIEA RDGYVVRGLV NLGNTCFFNS IMQNLLSLDR LRDHFLKENG SGVGGPLASS  60
   61 LRKLFTETKP EAGLKSVINP RAFFGSFCSK APQFRGYDQH DSHELLRCLL DSLSTEESAL 120
  121 RKKRGVSDND EKSTTLIESV FGGETSSIVS CMECGHSSKV YEPFLDLSLP VPFKKSPPKK 180
  181 PQPVSRAKKA KLPPKRVPKN VSKVSKVSKV LPGMVLSELN SSGKSMAVTA DSDTSCSSLA 240
  241 PLDNGPVLET PSVLTLDNNQ ASESASQSDT GFDGSWLDFI GPETSGDETN LDMQEDGIDN 300
  301 VITAEVNQIV PSPNIVANSS VSSGDQTLEG NT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.09691
Match: 2ibiA
Description: No description for 2ibiA was found.

Predicted Domain #3
Region A:
Residues: [547-794]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERLMQDYEEI AKAEANLDEK DVQAMQSDEC PATSGISAEF SQASCIGCDP GIGESSSSVN  60
   61 PWDEEELPLV VADSQILYMP YKEISCNDKS VEGECEASSS FVTGDHEPQN SDFVDFGGLF 120
  121 DEPETTEGPV FGPPSKAEAS GVGFMAFSSE SDPEEIDDSD LPVSVERCLG HFTKHEILSD 180
  181 DNAWNCENCS KNLKLQRLRE KRKSNEDESR SSNTSNGWVK ENEDEGFGET EILAVKQDPN 240
  241 DTSCVKDH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [795-961]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSDGRKAARI HSADESESKG TQDEDEDSEK VITVKRDATK KVLINKAPPV LTIHLKRFSQ  60
   61 DLRGRLSKLN GHVAFKEVID LRQYMDSRCS GEDPPVYRLA GLVEHSGTMR GGHYVAYVRG 120
  121 GQRVKETDSS STAWYNVSDA YVRQVSLEKV LHSEAYILFY ERIFSQE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle