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View Structure Prediction Details

Protein: MA653_ARATH
Organism: Arabidopsis thaliana
Length: 707 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MA653_ARATH.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
266.0 [0..1] [616..2178]
gi|116062137 - gi|116062137|dbj|BAF34699.1| fast skeletal myosin heavy chain isoform mMYH-6 [Oryzias latipes]
220.0 [0..1] [637..1175]
gi|45383668, gi|... - gi|9800486|gb|AAF99314.1|AF272033_1 fast myosin heavy chain isoform 2 [Gallus gallus], gi|45383668|r...
220.0 [0..1] [566..1182]
gi|4249701 - gi|4249701|gb|AAD13772.1| myosin heavy chain [Rana catesbeiana]
220.0 [0..1] [637..65]
gi|76643949 - gi|76643949|ref|XP_882447.1| PREDICTED: similar to myosin, heavy polypeptide 8, skeletal muscle, per...
219.0 [0..1] [617..1127]
MYH1 - myosin, heavy chain 1, skeletal muscle, adult
h0010399 - null
219.0 [0..1] [566..1178]

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Predicted Domain #1
Region A:
Residues: [1-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN  60
   61 RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS LKQELGRILP ELEEMQKRKV 120
  121 ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR 180
  181 VETIRKHLCT LYSHCSVLGM DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV 240
  241 KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV 300
  301 EAEVVRLDEV KASKMKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [318-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVLKKRSELE EICRKTHLLP VSDSAIDQTI VAIESGIVDA TMVLEHLEQH ISKIKEEALS  60
   61 RKEILERVEK WLSACDEESW LEEYNRDDNR YNAGRGAHLT LKRAEKARNL VTKLPGMVEA 120
  121 LASKTIVWEQ EN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #3
Region A:
Residues: [450-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIEFLYDGIR LLSMLEEYNI LRQEREEEHR RQRDQKKLQG QLIAEQEALY GSKPSPSKPL  60
   61 GGKKAPRMST GG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.810 a.16.1 S15/NS1 RNA-binding domain

Predicted Domain #4
Region A:
Residues: [522-707]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASNRRLSLGA AMHQTPKPNK KADHRHNDGA LSNGRRGLDI AGLPSRKQSM NPSEMLQSPL  60
   61 VRKPFSPIST TVVASKANIA TTTTQQLPKN NAVNEISSFA TPIKNNNILR NLEEEKMMTM 120
  121 MMQTPKNVAA MIPIPSTPAT VSVPMHTAPT PFTNNARLMS EKPEVVEYSF EERRLAFMLQ 180
  181 SECRLV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle