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View Structure Prediction Details

Protein: gi|15231987, gi|...
Organism: Arabidopsis thaliana
Length: 323 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15231987, gi|....

Description E-value Query
Range
Subject
Range
DNAJ_RHIME - Chaperone protein DnaJ OS=Rhizobium meliloti (strain 1021) GN=dnaJ PE=3 SV=1
DNAJ_RHIME - Chaperone protein dnaJ OS=Rhizobium meliloti GN=dnaJ PE=3 SV=1
315.0 [0..1] [323..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KDAEAKFKQI SEAYDVLSDP  60
   61 QKRAIYDQYG EEGLTSQAPP P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.522879
Match: 2dmxA
Description: No description for 2dmxA was found.

Predicted Domain #2
Region A:
Residues: [82-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAGGGFSDGG ASFRFNGRSA DDIFSEFFGF TRPFGDSRGA GPSNGFRFAE DVFSSNVVPP  60
   61 RKAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.221849
Match: 2cttA
Description: Solution structure of zinc finger domain from human DnaJ subfamily A menber 3
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [146-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIERQLPCSL EDLYKGVSKK MKISRDVLDS SGRPTTVEEI LTIEIKPGWK KGTKITFPEK  60
   61 GNEQRGIIPS DLVFIVDEKP HAVFKRDGND LVMTQKIPLV EALTGYTAQV STLDGRSVTV 120
  121 PINNVISPSY EEVVKGEGMP IPKDPSKKGN LRIKFTVKFP SRLTTEQKSG IKRMFSSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 2q2gA
Description: No description for 2q2gA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle