YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|191508198, gi...
Organism: Arabidopsis thaliana
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|191508198, gi....

Description E-value Query
Range
Subject
Range
gi|92895786 - gi|92895786|gb|ABE92847.1| Protein prenyltransferase, alpha subunit [Medicago truncatula]
394.0 [0..2] [324..4]

Back

Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPPRVRSV DSSDREFRSV LGPAGNKLQQ KPLSKPVKKP VAEKTKNLTF TEKMPQCSPL  60
   61 SPPILRRNGI SMTASYSSDA SSSCESSPLS MTSTSSGKRV LRRSGSVSSS SSLRRNLTEE 120
  121 RDEKASDCFC DGR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [134-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRCAWITPKS DQCYIAFHDE EWGVPVHDDK RLFELLSLSG ALAELSWKDI LSKRQLFREV  60
   61 FMDFDPIAIS ELTNKKITSP EIAATTLLSE QKLRSILENA NQVCKIIGAF GSFDKYIWNF 120
  121 VNQKPTQSQF RYPRQVPVKT SKAELISKDL VRRGFRSVSP TVIYSFMQTA GLTNDHLTCC 180
  181 FRHHDCMTKD ETGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.154902
Match: 2ofiA
Description: No description for 2ofiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle