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View Structure Prediction Details

Protein: PAP85_ARATH
Organism: Arabidopsis thaliana
Length: 486 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP85_ARATH.

Description E-value Query
Range
Subject
Range
gi|25991543 - gi|25991543|gb|AAN76862.1|AF453947_1 allergen Ana o 2 [Anacardium occidentale]
365.0 [0..9] [466..1]

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Predicted Domain #1
Region A:
Residues: [1-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITNKLIIT LLLLISIAVV HCLSFRVEID EFEPPQQGEQ EGPRRRPGGG SGEGWEEEST  60
   61 NHPYHFRKRS FSDWFQSKEG FVRVLPKFTK HAPALFRGIE NYRFSLVEME PTTFFVPHHL 120
  121 DADAVFIVLQ GKGVIEFVTD KTKESFHITK GDVVRIPSGV TNFITNTNQT VPLRLAQITV 180
  181 PVNNPGNYKD YFPAASQFQQ SYFNGFTKEV LSTSFNVPEE LLGRLVTRSK EIGQGIIRRI 240
  241 SPDQIKELAE HATSPSNKHK AKKEKEEDKD LRTLWTPFNL FAIDPIYSND FGHFHEAHPK 300
  301 NYNQLQDLHI AAAWANMTQG SLFLPHFNSK TTFVTFVENG CARFEMATPY KFQRGQQQWP 360
  361 GQGQEEEEDM SENVHKVVSR VCKGEVFIVP AGHPFTILSQ DQDFIAVGFG IYATNSKRTF 420
  421 LAGEENLLSN LNPAATRVTF GVGSKVAEKL FTSQNYSYFA PTSRSQQQIP EKHKPSFQSI 480
  481 LDFAGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.69897
Match: 1uikA
Description: Crystal structure of soybean beta-conglycinin alpha prime homotrimer
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle