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View Structure Prediction Details

Protein: AGP26_ARATH
Organism: Arabidopsis thaliana
Length: 136 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGP26_ARATH.

Description E-value Query
Range
Subject
Range
gi|4092885, gi|7... - pir||T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi|4092885|...
133.0 [0..4] [125..1417]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLFTAFT VLSLCLHTST SEFQLSTISA APSFLPEAPS SFSASTPAMS PDTSPLFPTP  60
   61 GSSEMSPSPS ESSIMPTIPS SLSPPNPDAV TPDPLLEVSP VGSPLPASSS VCLVSSQLSS 120
  121 LLLVLLMLLL AFCSFF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 1deqA
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle