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View Structure Prediction Details

Protein: APXT_ARATH
Organism: Arabidopsis thaliana
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APXT_ARATH.

Description E-value Query
Range
Subject
Range
gi|1419390 - gi|1419390|emb|CAA67426.1| thylakoid-bound ascorbate peroxidase [Arabidopsis thaliana]
404.0 [0..1] [426..1]

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Predicted Domain #1
Region A:
Residues: [1-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLSAASH LLCSSTRVSL SPAVTSSSSS PVVALSSSTS PHSLGSVASS SLFPHSSFVL  60
   61 QKKHPINGTS TRMISPKCAA SDAAQLISAK EDIKVLLRTK FCHPILVRLG WHDAGTYNKN 120
  121 IEEWPLRGGA NGSLRFEAEL KHAANAGLLN ALKLIQPLKD KYPNISYADL FQLASATAIE 180
  181 EAGGPDIPMK YGRVDVVAPE QCPEEGRLPD AGPPSPADHL RDVFYRMGLD DKEIVALSGA 240
  241 HTLGRARPDR SGWGKPETKY TKTGPGEAGG QSWTVKWLKF DNSYFKDIKE KRDDDLLVLP 300
  301 TDAALFEDPS FKNYAEKYAE DVAAFFKDYA EAHAKLSNLG AKFDPPEGIV IENVPEKFVA 360
  361 AKYSTGKKEL SDSMKKKIRA EYEAIGGSPD KPLPTNYFLN IIIAIGVLVL LSTLFGGNNN 420
  421 SDFSGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.09691
Match: 1iynA
Description: Crystal structure of chloroplastic ascorbate peroxidase from tobacco plants and structural insights for its instability
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-ascorbate peroxidase activity 1.96460182156892 bayes_pls_golite062009
oxidoreductase activity 0.978516842029632 bayes_pls_golite062009
peroxidase activity 0.26735879905965 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 0.26735879905965 bayes_pls_golite062009
antioxidant activity 0.122047246474386 bayes_pls_golite062009
catalytic activity 0.056410999656074 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle