YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18394286, gi\|...
Organism:	Arabidopsis thaliana
Length:	419 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18394286, gi|....

Description	E-value	Query Range	Subject Range
gi\|6730725, gi\|3... - gi\|6730725\|gb\|AAF27115.1\|AC018849_3 unknown protein; 13226-11448 [Arabidopsis thaliana], gi\|30699526...	217.0	[0..1]	[418..1]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	181.0	[0..16]	[222..1486]
RT15_DANRE - 28S ribosomal protein S15, mitochondrial OS=Danio rerio GN=mrps15 PE=2 SV=1	175.0	[0..262]	[417..47]
gi\|51090583, gi\|... - gi\|51090583\|dbj\|BAD36035.1\| ribosomal protein S15-like [Oryza sativa Japonica Group], gi\|215693301\|d...	174.0	[0..97]	[418..69]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	171.0	[0..3]	[237..1479]
MRPS28 - Mitochondrial ribosomal protein of the small subunit RT28_YEAST - 37S ribosomal protein S28, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|190404722 - gi\|190404722\|gb\|EDV07989.1\| 40S ribosomal protein S28, mitochondrial precursor [Saccharomyces cerevi... gi\|207346440 - gi\|207346440\|gb\|EDZ72933.1\| YDR337Wp-like protein [Saccharomyces cerevisiae AWRI1631]	168.0	[0..216]	[417..48]
gi\|50312023, gi\|... - gi\|50312023\|ref\|XP_456043.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645179\|emb\|CAG9875... gi\|49645179 - gi\|49645179\|emb\|CAG98751.1\| KLLA0F21582p [Kluyveromyces lactis]	167.0	[0..216]	[414..43]
RS15_HALOH - 30S ribosomal protein S15 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rpsO PE=3...	166.0	[0..329]	[412..2]
gi\|89266810 - gi\|89266810\|emb\|CAJ81537.1\| mitochondrial ribosomal protein S15 [Xenopus tropicalis]	166.0	[0..273]	[417..48]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALHLARRHQ RLPSNTSLIR FFSNSSSDSP PQFTNAPVEK PSQSPSSPSP SDSSPIFDIK  60
   61 NTLKLKLQNQ QEQGRKPFDR SDAQSQNRGS TSFSQNLGKN LAKFQRRSTV PPPRDSG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVQPPSYISL AGLYKQSAAT NSSDPRNSKA QGFNSNTVSE TLKNLRTQIN TSNNMGKRGG  60
   61 VLGSFKSTVG EALPKYLFET QMDESKGSEG ETEEAMTEFL MFYNEEELGE KLRTLRPEGE 120
  121 KKEGWFSLEE LNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [251-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLVKLRQVEE KEAQYRTKNF AQLRNVISSF KNENSEASSQ QNVAIMGHLG GIPEYKLLPP  60
   61 KEDLVDTYFH PDNM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.852	a.64.1	Saposin

Predicted Domain #4

Region A:
Residues: [325-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSAEKMKIEL SKVREEFKMS ESDCGSARVQ VAQLTTKIKH LSSSLHKKDK HSRKGLLGMV  60
   61 QKRKKLLKYL RRTDWDSYCL VLSKLSLRDN PDYKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1a32A
Description:	RIBOSOMAL PROTEIN S15 FROM BACILLUS STEAROTHERMOPHILUS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits