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View Structure Prediction Details

Protein: PX11A_ARATH
Organism: Arabidopsis thaliana
Length: 248 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PX11A_ARATH.

Description E-value Query
Range
Subject
Range
gi|56368451, gi|... - gi|56368451|emb|CAD58677.1| putative PEX11-3 protein [Arabidopsis thaliana], gi|21536511|gb|AAM60843...
231.0 [0..1] [248..1]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKAPEKIT KPKDRDFLNH LETYLSKRDG VDKLLKISRY ATKIILASSL IPETRSIIPR  60
   61 LKSFESSVGV SRKAFRLGKF VQDINALRSS RWDSNHELVL LIIAYGGEGL YYFVEQFIWL 120
  121 TKSGLIDAKH SKWLQKISAW AELVGYVGSV SIKIRDLRKL NDEESC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VASTIEISVS RGLACDGEDE KMKMIKEKKT LKVLSILQDL ADGLMTIADI RDGKGVLSAP  60
   61 NVISSAGLFS AIVSTHKNWI SC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.461 N/A N/A d.188.1 Prokaryotic ribosomal protein L17
View Download 0.339 N/A N/A a.24.17 Group V grass pollen allergen
View Download 0.334 N/A N/A a.4.1 Homeodomain-like
View Download 0.319 N/A N/A a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.318 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle