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View Structure Prediction Details

Protein: gi|9758728, gi|1...
Organism: Arabidopsis thaliana
Length: 694 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9758728, gi|1....

Description E-value Query
Range
Subject
Range
gi|388367 - gi|388367|gb|AAA34582.1| Dur3
341.0 [0..26] [681..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCPPFDFS TKYYDGDGGC QRQSSFFGGT TVLDQGVGYA VILGFGAFFA VFTSFLVWLE  60
   61 KRYVGARHTS EWFNTAGRNV KTGLIASVIV SQWTWAATIL QSSNVAWQYG VSGPFWYASG 120
  121 ATIQVLLFGV MAIEIKRKAP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAHTVCEIVK ARWGTATHIV FLVFCLATNV VVTAMLLLGG SAVVNALTGV NLYAASFLIP  60
   61 LGVVVYTLAG GLKATFLASY VHSVIVHVAL VVFVFLVYTS SKEL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [245-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSPSVVYDRL KDMVAKSRSC TEPLSHHGQA CGPVDGNFRG SYLTMLSSGG AVFGLINIVG  60
   61 NFGTVFVDNG YWVSAIAARP SSTHKGYLLG GLVWFAVPFS LATSLGLGAL ALDLPISKDE 120
  121 ADRGLVPPAT AIALM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [380-557]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKSGSLLLLT MLFMAVTSAG SSELIAVSSL FTYDIYRTYI NPRATGRQIL KISRCAVLGF  60
   61 GCFMGILAVV LNKAGVSLGW MYLAMGVLIG SAVIPIAFML LWSKANAFGA ILGATSGCVF 120
  121 GIITWLTTAK TQYGRVDLDS TGKNGPMLAG NLVAILTVRP QNYDWSTTRE IKVVEAYA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [558-694]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGDEDVDVPA EELREEKLRR AKAWIVKWGL VFTILIVVIW PVLSLPARVF SRGYFWFWAI  60
   61 VAIAWGTIGS IVIIGLPLVE SWDTIKSVCM GMFTNDRVMK KLDDLNHRLR ALTMAVPEAE 120
  121 KIYLLELEKT KKNDEEG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle