| Protein: | LRX1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 744 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRX1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
385.0 | [0..3] | [507..94] |
|
|
384.0 | [0..4] | [477..191] |
|
|
367.0 | [0..5] | [475..192] |
|
|
364.0 | [0..5] | [481..149] |
|
|
359.0 | [0..3] | [485..94] |
|
Region A: Residues: [1-426] |
1 11 21 31 41 51
| | | | | |
1 MLFPPLRSLF LFTLLLSSVC FLQIKADHDD ESDLGSDIKV DKRLKFENPK LRQAYIALQS 60
61 WKKAIFSDPF NFTANWNGSD VCSYNGIYCA PSPSYPKTRV VAGIDLNHAD MAGYLASELG 120
121 LLSDLALFHI NSNRFCGEVP LTFNRMKLLY ELDLSNNRFV GKFPKVVLSL PSLKFLDLRY 180
181 NEFEGKIPSK LFDRELDAIF LNHNRFRFGI PKNMGNSPVS ALVLADNNLG GCIPGSIGQM 240
241 GKTLNELILS NDNLTGCLPP QIGNLKKVTV FDITSNRLQG PLPSSVGNMK SLEELHVANN 300
301 AFTGVIPPSI CQLSNLENFT YSSNYFSGRP PICAASLLAD IVVNGTMNCI TGLARQRSDK 360
361 QCSSLLARPV DCSKFGCYNI FSPPPPTFKM SPEVRTLPPP IYVYSSPPPP PSSKMSPTVR 420
421 AYSPPP
|
| Detection Method: |  |
| Confidence: | 47.0 |
| Match: | 2omuA |
| Description: | No description for 2omuA was found. |
|
Region A: Residues: [427-504] |
1 11 21 31 41 51
| | | | | |
1 PPSSKMSPSV RAYSPPPPPY SKMSPSVRAY PPPPPPSPSP PPPYVYSSPP PPYVYSSPPP 60
61 PPYVYSSPPP PPYVYSSP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.453 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.453 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.308 | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.279 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.271 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.269 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.269 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [505-674] |
1 11 21 31 41 51
| | | | | |
1 PPPYVYSSPP PPYVYSSPPP PPPSPPPPCP ESSPPPPVVY YAPVTQSPPP PSPVYYPPVT 60
61 QSPPPPSPVY YPPVTNSPPP PSPVYYPPVT YSPPPPSPVY YPQVTPSPPP PSPLYYPPVT 120
121 PSPPPPSPVY YPPVTPSPPP PSPVYYPPVT PSPPPPSPVY YPSETQSPPP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [675-744] |
1 11 21 31 41 51
| | | | | |
1 PTEYYYSPSQ SPPPTKACKE GHPPQATPSY EPPPEYSYSS SPPPPSPTSY FPPMPSVSYD 60
61 ASPPPPPSYY
|
| Detection Method: | |
| Confidence: | 0.972 |
| Match: | 1q1qA |
| Description: | Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP |
Matching Structure (courtesy of the PDB): |
|
