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View Structure Prediction Details

Protein: Y1178_ARATH
Organism: Arabidopsis thaliana
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1178_ARATH.

Description E-value Query
Range
Subject
Range
gi|91077018 - gi|91077018|ref|XP_966622.1| PREDICTED: similar to CG9924-PC, isoform C [Tribolium castaneum]
229.0 [0..3] [323..99]

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Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDTKVETIS RLAQWRIENF GPCSFKKSDP FKVGIWNWHL SIERNRYLSV RLFPELSRVS  60
   61 KEQPPVAKFV LRVSNVGPNR RFYISPVYEK LLRTTDDCVW HVDSSFHGRF TIDVEFLDLK 120
  121 ICPVNGGEAS PVWPTDATMQ SISTQTTLKC LSRMLEESIL TDVIIHTADG TLSAHKAILS 180
  181 ASSTVFKSMF HHDLMEKESS TIHIDDMSRE SCMALLSYLY GNITQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [227-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFWKHRLALL GAANKYDITD LKAACEESLM EDINSSNVLE RLQEAWLYQL EKLKKGCLMY  60
   61 LFDFGKIYDV REEISSFFRQ ADRELMLEMF QEVLSVWKPV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 2eqxA
Description: No description for 2eqxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle