| Protein: | gi|9758979, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 1165 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9758979, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
556.0 | [0..1] | [1150..1] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MAASSSSTGL PPQHQVFINF RGEDLRLGFV SHLVEALEND NIKVFIDNYA DKGEPLETLL 60
61 TKIHDSKIAL AIFSGKYTES TWCLRELAMI KDCVEKGKLV AIPIFYKVDP STVRGVRGQF 120
121 GDAFRDLEER DVIKKKEWKQ ALKWIPGLIG
|
| Detection Method: |  |
| Confidence: | 3.84 |
| Match: | 1fyvA |
| Description: | Toll-like receptor 1, TLR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.166909062418251 | bayes_pls_golite062009 |
|
Region A: Residues: [151-237] |
1 11 21 31 41 51
| | | | | |
1 ITVHDKSPES EILNEIVKEV KKVLKKVSLE GSQKVVSVDP SQSIDTLSSV GGEKDKTFGI 60
61 KQRLKELEEK LDLVKYKGTR VIGVVGM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [238-391] |
1 11 21 31 41 51
| | | | | |
1 PGIGKTTLVK ELYKTWQGKF SRYALIDQIR GKSNNFRLEC LPTLLLEKLL PELNNPQLDS 60
61 IEEPYKTHKG LLRERKVLVV LDDVSRREQI YALLGKYDLH SKHEWIKDGS RIIIATNDIS 120
121 SLKGLVHDTY VVRQLNHRDG LQLFRYHAFH YDQA
|
| Detection Method: | |
| Confidence: | 3.221849 |
| Match: | 1z6tA |
| Description: | Structure of the apoptotic protease-activating factor 1 bound to ADP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [392-939] |
1 11 21 31 41 51
| | | | | |
1 TPPKVDFMKL SDEFVHYARG HPLALKILGR ELYEKNMKHW ETKLIILAQS PTTYIGEVVQ 60
61 VSYDELSLAQ KDAFLDIACF RSQDVDYVES LLVSSDPGSA EAIKALKNKF LIDTCDGRVE 120
121 MHDLLYRFSR ELDLKASTQG GSKQRRLWVR QDIINVQQKT MGAANVRGIF LDLSEVKVET 180
181 SLDREHFKNM RNLRYLKLYN SHCPHECLTN NKINMPDGLE LPLKEVRCLH WLKFPLEELP 240
241 NDFDPINLVD LKLPYSEIER LWDGVKDTPV LKWVDLNHSS KLCSLSGLSK AQNLQRLNLE 300
301 GCTSLESLRD VNLTSLKTLT LSNCSNFKEF PLIPENLKAL YLDGTSISQL PDNVGNLKRL 360
361 VLLNMKDCKV LETIPTCVSE LKTLQKLVLS GCSKLKEFPE INKSSLKILL LDGTSIKTMP 420
421 QLPSVQYLCL SRNDHLIYLP AGINQVSQLT RLDLKYCTKL TYVPELPPTL QYLDAHGCSS 480
481 LKNVAKPLAR IMSTVQNHYT FNFTNCGNLE QAAKEEITSY AQRKCQLLSD ARKHYNEGSE 540
541 ALFSTCFP
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 2z64A |
| Description: | No description for 2z64A was found. |
|
Region A: Residues: [940-1071] |
1 11 21 31 41 51
| | | | | |
1 GCEVPSWFGH EAVGSLLQRK LLPHWHDKRL SGIALCAVVS FPDSQDQLSC FSVTCTFKIK 60
61 AEDKSWVPFT CPVGIWTREG NKKDRIESDH VFIAYISSPH SIRCLEEKNS DKCNFSEASL 120
121 EFTVTSDTSG IG
|
| Detection Method: | |
| Confidence: | 14.154902 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1072-1165] |
1 11 21 31 41 51
| | | | | |
1 VFKVLKCGLS LVYENDKNKN SSLEAKYDVP VEVSFQEPEH GIMEEERYIN KRRSDDRRPK 60
61 KKRKTKRDDI MIISTVTQTC VPSVNARIED KVTG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
