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View Structure Prediction Details

Protein: CDPKE_ARATH
Organism: Arabidopsis thaliana
Length: 530 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CDPKE_ARATH.

Predicted Domain #1
Region A:
Residues: [1-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCCGTAGS LIQDKQKKGF KLPNPFSNEY GNHHDGLKLI VLKEPTGHEI KQKYKLGREL  60
   61 GRGEFGVTYL CTEIETGEIF ACKSILKKKL KTSIDIEDVK REVEIMRQMP EHPNIVTLKE 120
  121 TYEDDKAVHL VMELCEGGEL FDRIVARGHY TERAAASVIK TIIEVVQMCH KHGVMHRDLK 180
  181 PENFLFANKK ETASLKAIDF GLSVFFKPGE RFNEIVGSPY YMAPEVLRRS YGQEIDIWSA 240
  241 GVILYILLCG VPPFWAETEH GVAKAILKSV IDFKRDPWPK VSDNAKDLIK KMLHPDPRRR 300
  301 LTAQQVLDHP WIQNGKNASN VSLGETVRAR LKQFSVMNKL KKRALR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.221849
Match: 2bdwA
Description: Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [347-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIAEHLSVEE TSCIKERFQV MDTSNRGKIT ITELGIGLQK LGIVVPQDDI QILMDAGDVD  60
   61 KDGYLDVNEF VAISVHIRKL GNDEHLKKAF TFFDKNKSGY IEIEELRDAL ADDVDTTSEE 120
  121 VVEAIILDVD TNKDGKISYD EFATMMKTGT DWRKASRQYS RDLFKCLSLK LMQDGSLQSN 180
  181 GDTK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1s6iA
Description: Ca2+-regulatory region (CLD) from soybean calcium-dependent protein kinase-alpha (CDPK) in the presence of Ca2+ and the junction domain (JD)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle