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View Structure Prediction Details

Protein: DOF34_ARATH
Organism: Arabidopsis thaliana
Length: 253 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DOF34_ARATH.

Description E-value Query
Range
Subject
Range
gi|1212759 - gi|1212759|emb|CAA61485.1| DNA binding protein [Arabidopsis thaliana]
337.0 [0..14] [253..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC  60
   61 RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV VSNSNGVPLQ TTPVL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.966
Match: 2cklB
Description: No description for 2cklB was found.

Predicted Domain #2
Region A:
Residues: [116-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPQSSISNGV THTVTESDGK GSALSLCGSF TSTLLNHNAA ATATHGSGSV IGIGGFGIGL  60
   61 GSGFDDVSFG LGRAMWPFST VGTATTTNVG SNGGHHAVPM PATWQFEGLE SNAGGGFVSG 120
  121 EYFAWPDLSI TTPGNSLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle