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View Structure Prediction Details

Protein: NUD23_ARATH
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUD23_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593406 - gi|21593406|gb|AAM65373.1| unknown [Arabidopsis thaliana]
249.0 [0..1] [280..1]

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Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKAVQILGW SSGLTISQRL TKTRKSSTVS FISSSLNLSS VTSSSPRRIF SFKPTRMSSS  60
   61 LPGSDPVANS PTFVSVQSAG DVRKIKFCQW CGGPTKHEIP DGEEKLRAIC THCGKIAYQN 120
  121 PKMVVGCLIE HEGKVLLCKR NIQPSHGLWT LPAGYLEVGE SAAQGAMRET WEEAGATVEV 180
  181 ISPFAQLDIP LIGQTYVIFL AKLKNLHFAP GPESLECRLF ALDEIPFDSL AFSSIYVTLN 240
  241 LYLEDLKKGK LKFHYGTINK RPGSSPSDIR AFSLDYHLQP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1vk6A
Description: Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle