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View Structure Prediction Details

Protein: GGPPA_ARATH
Organism: Arabidopsis thaliana
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGPPA_ARATH.

Description E-value Query
Range
Subject
Range
gi|20386366 - gi|20386366|gb|AAM21638.1|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus incanus subsp. cr...
334.0 [0..8] [344..34]

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Predicted Domain #1
Region A:
Residues: [1-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENREVFVYI VISIFRSLQF LFWRFRPRYN DVTSALTRPL TSAASYDFKF MSYMVNKAKS  60
   61 VNKALEEAVP LREPELKIRE AMRYTLLSDG KRVRPMLCLA ACELVGGQES TAMSAACAIE 120
  121 MLHASSLILD DLPCMDNDSL RRGKPTNHIV FGESIAILAS QALIALAVQK TTSSTFADVP 180
  181 PERILKTVQE MVKAVEGLVA GQQADLAGEG MRFDSDTGLE HLEFIHIHKT AALLEAAAVM 240
  241 GAIMGGGSDE EIERLRSYAR CIGLMFQVVD DVLDVTKSSE ELGKTAGKDL IAGKLTYPRL 300
  301 MGVEKSKEYA ERLNIEAREH LLGFDIDKVA PLVSLADYIV NRQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.39794
Match: 2j1pA
Description: No description for 2j1pA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle