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View Structure Prediction Details

Protein: CESA6_ARATH
Organism: Arabidopsis thaliana
Length: 1084 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CESA6_ARATH.

Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTGGRLIAG SHNRNEFVLI NADENARIRS VQELSGQTCQ ICRDEIELTV DGEPFVACNE  60
   61 CAFPVCRPCY EYERREGNQA CPQCKTRFKR LKGSPRVEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.045757
Match: 1weoA
Description: Solution structure of RING-finger in the catalytic subunit (IRX3) of cellulose synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [100-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEEEDDIDDL DNEFEYGNNG IGFDQVSEGM SISRRNSGFP QSDLDSAPPG SQIPLLTYGD  60
   61 EDVEISSDRH ALIVPPSLGG HGNRVHPVSL SDPTVAAHPR PMVPQKDLAV YGYGSVAWKD 120
  121 RMEEWKRKQN EKLQVVRHEG DPDFEDGDDA DFP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [253-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDEGRQPLS RKIPIKSSKI NPYRMLIVLR LVILGLFFHY RILHPVKDAY ALWLISVICE  60
   61 IWFAVSWVLD QFPKWYPIER ETYLDRLSLR YEKEGKPSGL SPVDVFVSTV DPLKEPPLIT 120
  121 ANTVLSILAV DYPVDKVACY VSDDGAAMLT FEALSETAEF A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [414-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKWVPFCKKY CIEPRAPEWY FCHKMDYLKN KVHPAFVRER RAMKRDYEEF KVKINALVAT  60
   61 AQKVPEDGWT MQDGTPWPGN SVRDHPGMIQ VFLGSDGVRD VENNELPRLV YVSREKRPGF 120
  121 DHHKKAGAMN SLIRVSGVLS NAPYLLNVDC DHYINNSKAL REAMCFMMDP QSGKKICYVQ 180
  181 F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.09691
Match: 2z87A
Description: No description for 2z87A was found.

Predicted Domain #5
Region A:
Residues: [595-657]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQRFDGIDRH DRYSNRNVVF FDINMKGLDG LQGPIYVGTG CVFRRQALYG FDAPKKKKGP  60
   61 RKT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [658-828]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNCWPKWCLL CFGSRKNRKA KTVAADKKKK NREASKQIHA LENIEEGRVT KGSNVEQSTE  60
   61 AMQMKLEKKF GQSPVFVASA RMENGGMARN ASPACLLKEA IQVISCGYED KTEWGKEIGW 120
  121 IYGSVTEDIL TGFKMHSHGW RSVYCTPKLA AFKGSAPINL SDRLHQVLRW A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [829-1084]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGSVEIFLSR HCPIWYGYGG GLKWLERLSY INSVVYPWTS LPLIVYCSLP AICLLTGKFI  60
   61 VPEISNYASI LFMALFSSIA ITGILEMQWG KVGIDDWWRN EQFWVIGGVS AHLFALFQGL 120
  121 LKVLAGVDTN FTVTSKAADD GEFSDLYLFK WTSLLIPPMT LLIINVIGVI VGVSDAISNG 180
  181 YDSWGPLFGR LFFALWVIIH LYPFLKGLLG KQDRMPTIIV VWSILLASIL TLLWVRVNPF 240
  241 VAKGGPILEI CGLDCL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle