YRC Public Data Repository - Protein Structure Prediction

Protein:	P24DB_ARATH
Organism:	Arabidopsis thaliana
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P24DB_ARATH.

Description	E-value	Query Range	Subject Range
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	232.0	[0..10]	[225..4]
gi\|149047669, gi... - gi\|27697481\|ref\|XP_223611.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	227.0	[0..15]	[225..9]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	227.0	[0..15]	[225..9]
TMED9 - transmembrane emp24 protein transport domain containing 9	225.0	[0..23]	[225..25]
gi\|114613157 - gi\|114613157\|ref\|XP_001145929.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	224.0	[0..29]	[225..23]
gi\|73970438 - gi\|73970438\|ref\|XP_538565.2\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	222.0	[0..28]	[225..30]
gi\|76615572 - gi\|76615572\|ref\|XP_585552.2\| PREDICTED: similar to Transmembrane emp24 protein transport domain cont...	220.0	[0..35]	[225..81]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLPSRYKI HKTKLRWILT MMTMMMMMVM RRGESMRLDM ESGNTKCISD DIKTNYMTVG  60
   61 TYSIVNPNEG HHLPPSHKLF VTVSSPKGKS HHHAENVESG KFVFTAEETG DYMTCFVAPG 120
  121 YRPTAKFAVD FEWKSGVEAK DWTTIAKRGQ ITMLEVEVRK LLDVTETIHE EMFQLIERER 180
  181 EMQELNRSTN SRMAALSLLS FVVTMSVAGL QLRHLKSFLE RKKLL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.408935
Match:	PF01105.16
Description:	No description for PF01105.16 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits