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View Structure Prediction Details

Protein: gi|11357202, gi|...
Organism: Arabidopsis thaliana
Length: 678 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11357202, gi|....

Description E-value Query
Range
Subject
Range
gi|50757295 - gi|50757295|ref|XP_425330.1| PREDICTED: similar to bromodomain containing protein 3; RING3-like gene...
323.0 [0..87] [570..255]

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Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRATSLNRS EPSDLESTVR RSTKRFNGQI SMSFKKRRCL TLFFLVLLSK QQSLSFLPIA  60
   61 GIVFPVALIS HFNFCMAPAV LANLNE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLFLGQCGAV FMRKYTNQPL SGDINNPLFN PNPNPNSISA YGNNSSKHFD DSSAYGDYVS  60
   61 FDLDGYTSNQ LRELKKRLNS ELEEVRFLRE RIESGTFVSG SVYTTQARSF AGETNDVGVK 120
  121 KTKTKKKKIG HGQKRSNPFA T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [228-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEPSLKRHVA LDLMSEKVLK SMMTTCGQIL VKLMKHKWSW VFLNPVDVVG LGLHDYHRIV  60
   61 DKPMDLGTVK MNLEKGLYRS PIDFASDVRL TFTNAMSYNP KGQDVYLMAE KLLSQFDVWF 120
  121 NPTLKRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.522879
Match: 2i8nA
Description: No description for 2i8nA was found.

Predicted Domain #4
Region A:
Residues: [355-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAQEVKVMGS SSRPGPEDNQ RVWNQNNVAE NARKGPEQIS IAKKLDSVKP LLPTLPPPPV  60
   61 IEITRDPSPP PSPVQPPPPP SPPPQPVNQV EASLEVRETN KGRKGKLPKP KAKDPNK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [472-584]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REMTMDEKGK LGVNLQELPP EKLGQLIQIL RKRTRDLPQD GDEIELDIEA LDNETLWELD  60
   61 RFVTNYRKMA SKIKRQGFIQ NVSTPPRNMP PVTEMGSAEK RGRKGGEAGE EDV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [585-678]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIGEDIPVED YPSVEIERDG TAAAASGGSS SSGSFSSSGS SSSSDSESGS SSGSDSDADS  60
   61 VQSPFVEAKE APWNLCVNGR ERKEGKLERK DFEC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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