YRC Public Data Repository - Protein Structure Prediction

Protein:	TGD4_ARATH
Organism:	Arabidopsis thaliana
Length:	479 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TGD4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|215712321, gi... - gi\|215712321\|dbj\|BAG94448.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115435680\|ref...	502.0	[0..1]	[479..2]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS  60
   61 PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL GQFDVQRFVT EIDKTKAFGR 120
  121 GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF 180
  181 NHEFPLHNLT AEAVWPGLFV DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK 240
  241 KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [291-479]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPHVAVSGI IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT  60
   61 AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF QKICPEVLVS 120
  121 LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF 180
  181 MVELRFFET