YRC Public Data Repository - Protein Structure Prediction

Protein:	OP161_ARATH
Organism:	Arabidopsis thaliana
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OP161_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21536521 - gi\|21536521\|gb\|AAM60853.1\| putative membrane channel protein [Arabidopsis thaliana]	139.0	[0..1]	[148..1]
gi\|76680711 - gi\|76680711\|ref\|XP_586837.2\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	134.0	[0..24]	[141..189]
gi\|52353640, gi\|... - gi\|52353640\|gb\|AAU44206.1\| putative amino acid selective channel protein [Oryza sativa Japonica Grou... gi\|218195962 - gi\|218195962\|gb\|EEC78389.1\| hypothetical protein OsI_18168 [Oryza sativa Indica Group]	134.0	[0..1]	[143..1]
gi\|109130740 - gi\|109130740\|ref\|XP_001104863.1\| PREDICTED: similar to Mitochondrial import inner membrane transloca...	132.0	[0..23]	[142..57]
Tim17b2-PB - The gene Translocase inner membrane 17 is referred to in FlyBase by the symbol Dmel\Tim17b2 (CG15257...	131.0	[0..23]	[147..7]
gi\|57111755 - gi\|57111755\|ref\|XP_538028.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	130.0	[0..23]	[142..7]
TIMM17B - translocase of inner mitochondrial membrane 17 homolog B (yeast) gi\|55662945 - gi\|55662945\|ref\|XP_521050.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	129.0	[0..23]	[142..7]
gi\|34933423, gi\|... - gi\|34933423\|ref\|XP_228758.2\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	129.0	[0..23]	[142..7]
TI17B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=1 SV=1	128.0	[0..23]	[142..7]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSTFSGTV STPKLSVAVD MGNPFLNLTV DAFLKIGAVG VTKSLAEDTY KAIDKGSLSK  60
   61 STLEHALKKL CKEGVYWGAA GGVYIGTEYG IERIRGSRDW KNAMLAGAAT GAVLSAVGKK 120
  121 GKDTIVIDAI LGGALATASQ FVNNHYFY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.275724
Match:	PF02466.10
Description:	No description for PF02466.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.931	N/A	N/A	a.24.18	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits