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View Structure Prediction Details

Protein: gi|8954052, gi|1...
Organism: Arabidopsis thaliana
Length: 311 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8954052, gi|1....

Description E-value Query
Range
Subject
Range
gi|21593282 - gi|21593282|gb|AAM65231.1| unknown [Arabidopsis thaliana]
216.0 [0..1] [311..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRTAAKRLL AGGGITTTRL LRLPKLRSTI IPSSYTSGLC TSSIGGNTES PMGKQSVNPN  60
   61 QSGPTASSST GTGEGQRRHE 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRKPRAEFQE EQARVLSASL RHVPRLGWTE EAMMAGSRDV GVSPSIVGSF SRKEAALVEF  60
   61 FMDECLQLLM DRIDSGLDLQ NLIPSERISK LIRIRLEMQV PYMSKWPQAL SIQAHPLNVP 120
  121 TSFKQRAMLV DEIWHAVGDG ASDLDWYVKR TILGGVYSTT EIYMLTDDSL EHRDTWAFLD 180
  181 DRVKDAFDLK KSIQEAKYFA EDIGAGVGKS VQGLMNGVMQ TMSRRSGGSA F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 2oflA
Description: No description for 2oflA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle